Gaolin Zheng Milledge
CONTACT
INFORMATION:
Department of Mathematics and Computer Science
Email:
gzheng at nccu dot edu
Tel: (919)
530-5110
EDUCATION:
Ph.D. in
Computer Science,
RESEARCH INTERESTS:
Biomedical data integration
Microarray Data Analysis
Parallel Protein Structure Local
Alignment
Biomedical Image Processing
TEACHING:
Spring
2008
COMP1525 (Object-Oriented Programming)
CISG 5203 (Algorithms in Computational Biology)
Fall
2007
COMP1520 (Programming II: C++)
MATH2000 (Calculus for Non-science Majors)
COMP4502 (Introduction to Mathematical Models in
Computational Biology and Bioinformatics)
Summer
2007
Spring
2007
COMP1520 (Programming II
: C++)
ADVISED MASTER THESIS:
Tonny
Sangutei, Bayesian Factor Analysis of Genetic Relationships. (April, 2008)
Refereed
Publications:
T. Milledge*, G. Zheng*, T. Mullins, and Narasimhan (2007)
SBLAST: Structural Basic Local Alignment Searching Tools Using Geometric
Hashing, IEEE Conference on Bioinformatics and Bioengineering (BIBE2007), p1343-1347. * Joint first authors.
G.
Zheng, E. O.
George, G. Narasimhan (2005). Microarray Data Analysis Using Neural Network Classifiers
and Gene Selection Methods, In Methods of Microarray Data Analysis IV,
Shoemaker, J. S., Lin, S. M. (Eds.) Springer, p207-222. [ISBN: 0-387-23074-2] (pdf).
M. Handfield, J. Mans, G. Zheng, M.C. Lopez, A. Progulske-Fox, G. Narasimhan, H.V. Baker, R.J. Lamont (2005). Distinct Expression Profiles Characterize Oral Epithelium-Microbiota Interactions, Cellular Microbiology, 7(6): 811-823. (pdf)
G. Zheng, T. Milledge, E. O. George, G. Narasimhan (2006). Pooling evidence to identify cell cycle-regulated genes, Proceedings of International Workshop on Bioinformatics Research and Applications (IWBRA), Lecture Notes in Computer Science, Vol. 3992, Springer Verlag, p694-701. (pdf)
T. Milledge, G. Zheng and G. Narasimhan (2006). Discovering Sequence-Structure Patterns in Proteins with Variable Secondary Structure, Proceedings of International Workshop on Bioinformatics Research and Applications (IWBRA), Lecture Notes in Computer Science, Vol. 3992, Springer Verlag, p702-709. (pdf)
G. Zheng, R. Capocasale, B. Amegadzie, P.J. Bugelski, J. Lu (2004). Analysis of the Effects of Recombinant Human Erythropoietin (EPO) on Murine Bone Marrow Populations Using Mixture Modeling Techniques, Proceedings of ICBA'04, p285-296. (pdf).
T. Milledge, S. Khuri, X. Wei, C. Yang, G. Zheng, G. Narasimhan (2005). Sequence Structure Patterns: Discovery and Applications, Proceedings of CBGI'05, p1282-1285. (pdf).
T. Milledge, G. Zheng, G. Narasimhan (2004). Applications of Data Mining in Epitope Prediction, Proceedings of ICBA'04, p390-401. (pdf).
G.
Zheng, E. O.
George, G. Narasimhan (2003). Neural Network Classifiers and Gene Selection
Methods for Microarray Data on Human Lung Adenocarcinoma, Proceedings of
CAMDA'03: Critical Assessment of Microarray Data Analysis,
G.
Narasimhan, Y. Gao, G. Zheng, K. Mathee (2001). Applications of Pattern
Discovery in Bioinformatics, Invited paper for the Proceedings of the Fourth
International Conference on Information
Non-refereed Publications
E. O.
George, G. Zheng, G. Narasimhan
(2008). On Meta-Analytic Procedures for Pooling the Results of Several
Microarray Studies. (Abstract) International Conference on Interdisciplinary
Mathematical and Statistical Techniques - IMST 2008 / FIM XVI.
G. Zheng, E. O. George, G. Narasimhan
(2003). Integrating Information from Different Microarray Data Sets, Poster
presented at In Silico: the Fourth Georgia Tech and UGA International
Conference on Bioinformatics, Atlanta, GA. Department of Energy travel award
winner.
Carlos P.
Sosa, Tom Milledge, Jeffrey McAllister, Gaolin
Zheng Milledge (2006). Life Sciences Molecular Dynamics on the IBM
System Blue Gene Platform: Performance Overview, IBM,
G. Zheng, J. Lu (2004). CentPro: A Web-based
program for MHC Class II Epitope Prediction, Technical report, Johnson &
Johnson.
T.
Milledge, G. Zheng and G. Narasimhan
(2004). Prediction of HLA-A*0201 binding peptides in Plasmodium falciparum, Poster to CAMDA'04: Critical Assessment of
Microarray Data Analysis,
G.
Narasimhan, C. Bu, Y. Gao, T. Milledge, X. Wang, N. Xu, G. Zheng, K. Mathee (2002). Helix-Turn-Helix Motif Detection in Protein
Sequences. Poster, Asian Conference on Transcription, ACT-VII.
SOFTWARE:
AERSMiner:
A Web Data Mining Service for FDA Adverse Event Reporting System (http://www.cs.nccu.edu/~gmilledge/AERS/).
(Gaolin Milledge and Nathan Williams) Implemented in PHP, MySQL,
SBLAST: Parallel Structural Basic
Local Alignment tool (Coauthor with Tom Milledge, implemented in C++ and MPI).
MHC Class II Epitope Prediction
Program, Gaolin Zheng and
m-NP, Gaolin Zheng and Giri Narasimhan, Nov 2001. Java software to analyze replicate microarray data.
SeqletAssembler: A branch and bound approach for motif-based 3-D protein structure prediction, implemented in Java, 2001.
CommonSubStructSearch: A Matlab program to find common sub-structures among 3-D protein molecules. 2001. (Also implemented in Java).
Phrase Suffix Tree Builder, Quick Document Clustering for the Web. Implemented in Java, 2000.